Slicing Rebinning Filter

[Nick Draper]

Slicing rebinning filter. Allows clipping/cutting operations. Allows resolution (in terms on n of bins to be specified). View and Presenter required. Drives Mantid back-end algorithms.

[Owen Arnold]

(In [7268]) refs #1624 mantid-like icon/logo update

[Owen Arnold]

(In [7315]) refs #1624 Work to provide richer GUI according to ADD mock-ups.

[Owen Arnold]

(In [7363]) refs #1624 uninitalised widgets causing runtime error.

[Owen Arnold]

(In [7831]) refs #1624 Get rid of tests in visualisation plugin directory.

[Owen Arnold]

(In [7834]) refs #1624 Remove old helper class.

[Owen Arnold]

(In [7835]) refs #1624 Update cmake script

[Owen Arnold]

(In [7837]) refs #1624 Add presenter package.

[Owen Arnold]

(In [7893]) refs #1624. Simpler construction for ImplicitFunctions.

[Owen Arnold]

(In [7924]) refs #1624 Update to use new ImplicitFunctionFactory where no parser schema needs to be specified.

[Owen Arnold]

(In [8025]) refs #1624. BoxImplicit function and the ability to drive rebinning from xml.

[Owen Arnold]

(In [8027]) refs #1624. Remove scope resolution operator error.

[Owen Arnold]

(In [8049]) refs #1624. Fix Seg Error resulting from modifications to xml schema

[Owen Arnold]

(In [8052]) refs #1624. Link against MDDataObjects

[Owen Arnold]

(In [8089]) refs #1624 Solve vtk library problem which gave buggy filter.

[Owen Arnold]

(In [8098]) refs #1624 Clean-up presenter operation prior to introduction of box extents.

[Owen Arnold]

(In [8102]) refs #1624 Switch to use of box extents. Intermediate step prior to actual calls to DynamicRebinning and Qt Widgets to drive attribute creation.

[Owen Arnold]

(In [8109]) refs #1624. Implement methods to serialize domain objects for visualisation communications.

[Owen Arnold]

(In [8126]) refs #1624. Small modification to IMDWorkspace to allow access to Geometry xml.

[Owen Arnold]

(In [8130]) refs #1624 Convert domain objects to xml.

[Owen Arnold]

(In [8132]) refs #1624 Convert domain objects to xml. Add additional constructon routes.

[Nick Draper]

Bulk move of tickets to iteration 27, if your ticket is essential for Iteration 26 then move it back.

[Owen Arnold]

(In [8169]) refs #1624 Now Handles full xml schema not just function aspects. DynamicRebinning algorithm not yet hooked-up.

[Owen Arnold]

(In [8172]) refs #1624 Modifications for GCC compatibility. Additional test for DynamicRebinningXML.

[Owen Arnold]

(In [8173]) refs #1624 Modifications for GCC compatibility. Additional test for DynamicRebinningXML.

[Owen Arnold]

(In [8174]) refs #1624 Modifications for GCC compatibility. Additional test for DynamicRebinningXML.

[Owen Arnold]

(In [8274]) refs #1624 Rebinning slicing operations. First pass db added.

[Owen Arnold]

(In [8281]) refs #1624 Provide 4th dimension as time in VisIT db.

[Owen Arnold]

(In [8453]) refs #1624. Update metadata schema.

[Owen Arnold]

(In [8458]) refs #1624 CMake script for building MDDataObjects. Rough at this stage.

[Owen Arnold]

(In [8477]) refs #1624. Progress towards hdf5 handling. Find module as next step.

[Owen Arnold]

(In [8478]) refs #1624 No need to link against gtest

[Owen Arnold]

(In [8482]) refs #1624 CMake for MDAlgorithms working. All tests pass. However. OpenMP code, not happy cross platform and has therefore been disabled. OpenMP code will need to be fixed.

[Owen Arnold]

(In [8483]) refs #1624 Fix to provide headers for MDDataObjects.

[Owen Arnold]

(In [8491]) refs #1624 Preliminary CMake scripts for VisitPresenters.

[Owen Arnold]

(In [8501]) refs #1624 Visit presenters build under cmake. Tests run from sh script. All pass. Test script not great, but soon to be ditched.

[Michael Reuter]

(In [8532]) Commenting out currently unused class. This refs #1624.

[Owen Arnold]

(In [8542]) refs #1624 Allow specification of MANTIDPATH for external applications.

[Owen Arnold]

(In [8543]) refs #1624 Fixes to support use of seperate md workspace loading algorithm

[Owen Arnold]

(In [8602]) refs #1624 Project 4D dataset from visit database. Working RebinningCutting, but looks like errors in rebinning code causing odd image.

[Michael Reuter]

(In [8607]) Added missing static member. This refs #1624.

[Owen Arnold]

(In [8656]) refs #1624 Crude rebinning working in 4D.

[Owen Arnold]

(In [8714]) refs #1624. Dynamic rebinning with metatdata picked up from pipeline.

[Owen Arnold]

(In [8765]) refs #1624 Widgets For Displaying Dimensions. Sync when dimension selection is changed.

[Owen Arnold]

(In [8787]) refs #1624 Widgets For Displaying Dimensions. Can now be populated upon first execution of filter. Minor fixes to display previous extents and to enable volume rendering.

[Owen Arnold]

(In [8807]) refs #1624 Widgets For Displaying Dimensions. Can now be populated upon first execution of filter. Minor fixes to display previous extents and to enable volume rendering.

[Owen Arnold]

(In [8810]) refs #1624 Legacy project files removed

[Owen Arnold]

(In [8896]) refs #1624 Working compound slicing. Other minor fixes for gui controls.

[Owen Arnold]

(In [8900]) refs #1624 Missing BoxInterpreter

[Owen Arnold]

(In [8923]) refs #1624 Factory method for grid types. Apply sparse unstructured variation. Next step to fully extract all grid types to factory implementations and dependency inject.

[Owen Arnold]

(In [8936]) refs #1624. Demo file added to test directory.

[Owen Arnold]

(In [8945]) refs #1624 Factory methods for grid types now injected at top level. Compile-time policies used to configure geometric and Image information for testability.

[Owen Arnold]

(In [9042]) refs #1624 Specify Rotation Matrix.

[Owen Arnold]

(In [9043]) refs #1624 Minor fix to test.

[Owen Arnold]

(In [9137]) refs #1624 Extend planes to provide basis for rotations and to enable thickness as part of slicing.

[Owen Arnold]

(In [9141]) refs #1624. Dual virtual plane approach to plane with width for evaluation function. Also address compiler warnings.

[Owen Arnold]

(In [9142]) refs #1624 Plane may now be interpreted as a rotation against principle axes.

[Owen Arnold]

(In [9143]) refs #1624 Missing file

[Owen Arnold]

(In [9151]) refs #1624 Bidirectional synchronization between interactors and attributes. Verify Rebinning rotations in visualisation.

[Michael Reuter]

(In [9245]) Adding definitions to make library work. Unneeded functions? This refs #1624.

[Michael Reuter]

(In [9246]) Let data finder handle things since file is in repository. This refs #1624.

[Owen Arnold]

(In [9262]) refs #1624 Caching

[Owen Arnold]

(In [9267]) refs #1624 Reorganise

[Owen Arnold]

(In [9269]) refs #1624 Reorganise

[Owen Arnold]

(In [9271]) refs #1624 Reorganise

[Owen Arnold]

(In [9272]) refs #1624 no longer needed

[Owen Arnold]

(In [9275]) refs #1624 remove inc

[Owen Arnold]

(In [9276]) refs #1624 move includes

[Owen Arnold]

(In [9278]) refs #1624 reorganise

[Owen Arnold]

(In [9279]) refs #1624 reorgainse remove src

[Owen Arnold]

(In [9280]) refs #1624 New CMakeLists.txt

[Owen Arnold]

(In [9281]) refs #1624 modify paths in operator CMakeLists.txt

[Owen Arnold]

(In [9282]) refs #1624 fix error in paths

[Owen Arnold]

(In [9302]) refs #1624 Template for delayed rebinning operator. Should accumulate reduction knowlege, but not actually rebin.

[Owen Arnold]

(In [9317]) refs #1624 Fix const issue with RebinningCutterPresenter.

[Owen Arnold]

(In [9321]) refs #1624 Fix leaking CutterOperator in chained schenario. Valgrind indicates that VisIT should be left to handle clean-up of input data sets in operators.

[Owen Arnold]

(In [9328]) refs #1624 Show something sensible prior to operator execution to indicate why properties cannot be displayed.

[Owen Arnold]

(In [9333]) refs #1624 Seperate out common/shared code.

[Owen Arnold]

(In [9334]) refs #1624 Seperate out common/shared code.

[Owen Arnold]

(In [9354]) refs #1624 Separtate out dimension creation from xml from bulky DynamicRebinFromXML algorithm. Also used in VATES rebinning code.

[Owen Arnold]

(In [9436]) refs #1624 Progress update via ProgressAction Adapter pattern. Keeps Presenters unaware of VisIT, while allowing actual updates from algorithms to trigger progress updates in VisIT. Solves problem of inaction during long rebinning times.

[Owen Arnold]

(In [9493]) refs #1624 Minor change/correction from last checkin to cpr.

[Nick Draper]

Bulk move of tickets at the end of iteration 27

[Owen Arnold]

(In [9594]) re #1624. Minor fix to caching. Seed value needed to be fixed.

Remove time from GUI. The VisIT framework does not allow us to adapt time once it has been set in the reader/database.

[Owen Arnold]

(In [9739]) re #1624. No need to re-load original MDWorkspace as should be available in the analysis data service. Also, enable tests for MDDataObjects.

[Owen Arnold]

(In [9774]) re #1624. Fix issues identified by Michael while using the Rebinning cutter. Namely, the number of bins changing after changing the axis. Also a bug in the SetDimensions vtkDataSet call for vtkStructuredGridFactory, which prevented having non-uniform number of bins in each direction.

[Owen Arnold]

(In [10577]) re #2774 #2607 #1624 Adapt VatesAPI to handle generic algorithm for reading data.

[Owen Arnold]

(In [10648]) re #2774 #2607 #1624 Basic reader for Event nexus files added.

[Owen Arnold]

(In [10651]) re #2774 #2607 #1624 includes not needed here.

[Owen Arnold]

(In [11010]) re #2774 #2607 #1624 Modifications so that the workspace can be bound to an existing instance of a vtkDataSetFactory. Some enhancements for MDEventWorkspace visualisation.

[Nick Draper]

Bulk move of tickets at the end of iteration 28

[Owen Arnold]

(In [11256]) re #1624. Recover dimension swapping capabilities after changes in underlying MDGeometry code.

[Owen Arnold]

Initial filter has been done for some time. Moving forward we should develop against more precise and specific tickets to improve the rebinning/cutting behaviour. This filter can be tested by (a) running it manually, (b) ensuring that the VatesAPI unit tests, which do most of the heavy-lifting run.

[Janik Zikovsky]

Unit tests run, and it works in the GUI (except if you rotate the box, I guess there isn't non-perpendicular binning)

[Owen Arnold]

As an addition to this closing statement: Yes, we cannot apply non-axis aligned rebinning using MDGeometryDescriptions. EventNexusReader + BinToHistogramWorkspace is the only rebinning plugin + algorithmn using ImplicitFunctions at present.

[Stuart Campbell]

This ticket has been transferred to github issue ​2471