Ticket #4794 (closed: fixed)
MergeMDFiles: try a couple of things to speed it up
Reported by: | Janik Zikovsky | Owned by: | Janik Zikovsky |
---|---|---|---|
Priority: | minor | Milestone: | Release 2.1 |
Component: | Mantid | Keywords: | |
Cc: | Blocked By: | ||
Blocking: | Tester: | Michael Reuter |
Description
Change History
comment:2 Changed 9 years ago by Janik Zikovsky
My starting point: 1157 seconds to merge 20 files made from TOPAZ_3007.nxs:
import time LoadEventNexus(Filename='/home/8oz/data/TOPAZ_3007_event.nxs',OutputWorkspace='TOPAZ_3007_NXS',CompressTolerance='0.10000000000000001') start = time.time(); for omega in xrange(0, 20): print "Starting omega %03d degrees" % omega CreateMDWorkspace(Dimensions='3',Extents='-10,10,-10,10,-10,10',Names='Q_sample_x,Q_sample_y,Q_sample_z',Units='A,A,A',SplitInto='5',SplitThreshold='2000',MaxRecursionDepth='3', MinRecursionDepth='3', OutputWorkspace='TOPAZ_3007_MD') # Convert events to MD events AddSampleLog("TOPAZ_3007_NXS", "omega", "%s" % omega, "Number Series") ConvertToDiffractionMDWorkspace(InputWorkspace='TOPAZ_3007_NXS',OutputWorkspace='TOPAZ_3007_MD',OutputDimensions='Q (sample frame)',LorentzCorrection='1', Append='1') SaveMD("TOPAZ_3007_MD", "/home/8oz/data/rotated_md/TOPAZ_3007_rotated_%03d.nxs" % omega) print time.time() - start, " seconds since start."
A total of near 1 billion neutron events.
comment:3 Changed 9 years ago by Janik Zikovsky
Refs #4794: addEventUnsafe() method on MDBoxes
To try to speed up MergeMDFiles, however my second try is 1172 seconds which is slightly slower than before.
Changeset: 7aa491f8c2191b003699a6d3e11a91cb2f074523
comment:4 Changed 9 years ago by Janik Zikovsky
Refs #4794: Parallel flag for MergeMDFiles can be faster
I got 15.75 minutes (down from 19.5) using it.
Changeset: d3413b97ad3547704035da38df70d768361a3cb4
comment:5 Changed 9 years ago by Janik Zikovsky
- Status changed from accepted to verify
- Resolution set to fixed
I think I had 25 minutes or so when the coord_t type was doubles (so files were about twice the size) so getting down to 15 minutes is pretty good. This compares well to Toby Perring's benchmark of 30 minutes for a billion events.
comment:6 Changed 9 years ago by Janik Zikovsky
Refs #4794: Parallel flag for MergeMDFiles can be faster
I got 15.75 minutes (down from 19.5) using it.
Changeset: d3413b97ad3547704035da38df70d768361a3cb4
comment:7 Changed 8 years ago by Michael Reuter
- Status changed from verify to verifying
- Tester set to Michael Reuter