Ticket #7238 (closed: fixed)

Opened 7 years ago

Last modified 5 years ago

Adjust the script ReduceOneSCD_Run to extend to the Mandi and other instruments

Reported by: Ruth Mikkelson Owned by: Dennis Mikkelson
Priority: major Milestone: Release 2.6
Component: Diffraction Keywords: SCD;Redution
Cc: mikkelsond@… Blocked By:
Blocking: Tester: Vickie Lynch

Description

The size of unit cells used by SCD instruments vary widely. Another parameter is needed for that and several other parameters need fine tuning.

Attachments

ReduceMandi306.config (6.0 KB) - added by Dennis Mikkelson 7 years ago.
Script configuration file for protein data, MANDI 306

Change History

comment:1 Changed 7 years ago by Ruth Mikkelson

  • Owner set to Ruth Mikkelson
  • Status changed from new to accepted

comment:2 Changed 7 years ago by Ruth Mikkelson

Refs #7238 Added and used a max_Q parameter

Also there was some minor tweaking

Changeset: 72f7316fb9d1181ec6724b1fcc296d299cee9594

comment:3 Changed 7 years ago by Dennis Mikkelson

  • Status changed from accepted to assigned
  • Owner changed from Ruth Mikkelson to Dennis Mikkelson

comment:4 Changed 7 years ago by Dennis Mikkelson

  • Status changed from assigned to accepted

comment:5 Changed 7 years ago by Dennis Mikkelson

RE 7238_ImprvReduceSCDScript

Move max_Q earlier in the config file and add comment about the meaning of max_Q.

refs #7238

Changeset: 4bc3074c68c91c4c3114b298f4dc5cb8691d4e99

Changed 7 years ago by Dennis Mikkelson

Script configuration file for protein data, MANDI 306

comment:6 Changed 7 years ago by Dennis Mikkelson

  • Status changed from accepted to verify
  • Resolution set to fixed

NOTES TO TESTER

The branch name is: feature/7238_ImprvReduceSCDScript

This script can be tested on the SNS LINUX cluster as follows:

  1. Copy the four files in Code/Mantid/scripts/SCD_Reduction to a scratch directory.
  2. Edit the file ReduceSCD.config and change the output directory to the scratch directory.
  3. Run the script using: python ReduceOneSCD_Run.py ReduceSCD.config 5637
  4. The script should finish in about a minute, producing .mat and .integrate files for the small molecule sapphire.
  5. Copy the attached protein config file: ReduceMandi306.config to the scratch directory and as before, change the output directory to the scratch directory.
  6. Run the script using: python ReduceOneSCD_Run.py ReduceMandi306.config 306
  7. This is a large file, so the script will finish in about six minutes, producing .mat and .integrate files for the protein data.

This verifies that the updated scripts will work for both small and large molecule data.

comment:7 Changed 7 years ago by Alex Buts

  • Status changed from verify to verifying
  • Tester set to Alex Buts

comment:8 Changed 7 years ago by Alex Buts

  • Status changed from verifying to verify
  • Tester Alex Buts deleted

looks like simple and reasonable ticket which done properly, but I have no way of accessing MANDI files or anything looking like MANDI files.

The ticket can be verified by SNS only

Last edited 7 years ago by Alex Buts (previous) (diff)

comment:9 Changed 7 years ago by Vickie Lynch

  • Status changed from verify to verifying
  • Tester set to Vickie Lynch

comment:10 Changed 7 years ago by Vickie Lynch

  • Status changed from verifying to closed

scripts work for me

comment:11 Changed 7 years ago by Nick Draper

  • Component changed from Mantid to Framework

comment:12 Changed 7 years ago by Nick Draper

  • Component changed from Framework to Diffraction

comment:13 Changed 5 years ago by Stuart Campbell

This ticket has been transferred to github issue 8084

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